Strategic Research
Genome Data Science (aGENDAS)
In order to address outstanding questions in biology and medicine, researchers need to discover meaningful and robust patterns from data. In the aGENDAS group, we strive to elucidate the links between mutational processes, natural selection, gene function and phenotype by means of statistical genome analyses. In particular, we use cutting-edge computational techniques and machine learning methodologies for exploring massive genomic data sets.
We aim to answer important biological questions by insightful analysis of data originating from human cancers (somatic mutations, chromosomal alterations, transcriptomes), human populations (germline variants), metagenomics (including human microbiomes) and also fully sequenced microbial genomes.
Institutions
Bioinformatics expertise:
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Biostatistics (21)
- AIZON (Aizon)
- Bioinformatics and Medical Statistics (UVic-UCC)
- Biomedical Signal Processing and Interpretation (IBEC)
- Biostatistics and Bioinformatics Research Group (UPC)
- Cancer genetics and epigenetics (IGTP)
- Chemometrics for Environmental Omics (CSIC)
- Clinical statistics and biodiversity (UB)
- Compositional and Spatial Data Analysis (UPC)
- Data and Signal Processing Research Group (UVic-UCC)
- Functional Genomics group of GRIB (UPF, IMIM)
- Genome Data Science (IRB Barcelona)
- IN2 Ingeniería de la Información (IN2)
- Mathematical Modeling of Metabolic Processes (UdL)
- Modelling, Identification and Control Engineering (UdG)
- Numerical Genomics - Statistical and population genomics (CRAG)
- Quantitative Psychology. Quantitative and Computational Neuroscience (UB)
- Research Group on Statistics, Econometrics and Health (UdG)
- Science and Engineering of Emerging Systems (URV)
- Sequentia Biotech (SeqBio)
- Statistics and Bioinformatics Research Group (UB)
- Statistics and Bioinformatics Unit (VHIR)
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Computational Genomics (39)
- Algorithms, Computational Biology, Complexity and Formal Methods (UPC)
- Bioinformatics of Genome Diversity (UAB)
- Biomedical Genomics (IRB Barcelona)
- Cancer genetics and epigenetics (IGTP)
- Cancer Genomics Group (VHIO)
- Centre Nacional d'Anàlisi Genòmica CNAG-CRG (CRG)
- Clinical Genomics Unit ()
- Comparative Bioinformatics (CRG)
- Comparative Genomics (UPF, CSIC)
- Computational & Mathematical Biology (CRM)
- Computational Biology of RNA processing (CRG)
- Computational Genomics (BSC)
- Computational Genomics Lab @ UB (UB)
- Computational RNA Biology group of GRIB (UPF, IMIM)
- Epigenetics of Endocrine Pancreatic Tumours (IGTP)
- Evolutionary and Functional Genomics Lab (UPF, CSIC)
- Evolutionary Genomics & Bioinformatics (UB)
- Evolutionary Genomics group of GRIB (UPF, IMIM)
- Evolutionary Genomics Lab (UPF, CSIC)
- Evolutionary Population Genetics Lab (UPF, CSIC)
- Evolutionary Systems Biology (UPF, CSIC)
- Gene Function and Evolution lab (CRG)
- Genome Data Science (IRB Barcelona)
- Genomic and Epigenomic Variation in Disease (CRG)
- Genomics and Bioinformatics Service (UAB)
- Genomics and Disease (CRG)
- Genomics of Individuality (UPF, CSIC)
- High Content Genomics and Bioinformatics (IGTP)
- Human Genome Diversity Group (UPF, CSIC)
- Information Modeling and Processing (UPC)
- Laboratory of Genetic Ichthyology (UdG)
- Made of Genes (MoG)
- Mathematical Modeling of Metabolic Processes (UdL)
- Molecular Modelling and Bioinformatics (UB, IRB Barcelona)
- Oncology Data Science Group (VHIO)
- Regulatory Genomics (IGTP)
- Sequentia Biotech (SeqBio)
- The CRG Bioinformatics Unit (CRG)
- Translational & Consumer Genomics Unit ()
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Genetic Variation Analysis (17)
- Cancer genetics and epigenetics (IGTP)
- Centre Nacional d'Anàlisi Genòmica CNAG-CRG (CRG)
- Clinical Genomics Unit ()
- Compositional and Spatial Data Analysis (UPC)
- Evolutionary and Functional Genomics Lab (UPF, CSIC)
- Evolutionary Genomics & Bioinformatics (UB)
- Evolutionary Genomics Lab (UPF, CSIC)
- Evolutionary Population Genetics Lab (UPF, CSIC)
- Evolutionary Systems Biology (UPF, CSIC)
- Functional Genomics group of GRIB (UPF, IMIM)
- Genome Data Science (IRB Barcelona)
- Genomics of Individuality (UPF, CSIC)
- High Content Genomics and Bioinformatics (IGTP)
- Human Genome Diversity Group (UPF, CSIC)
- Laboratory of Genetic Ichthyology (UdG)
- Sequentia Biotech (SeqBio)
- The CRG Bioinformatics Unit (CRG)
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Integrative Bioinformatics (18)
- Bioinformatics Platform (IDIBAPS)
- Cancer genetics and epigenetics (IGTP)
- Computer-aided Drug Design and Knowledge Management (ESTEVE)
- Costaisa (Costaisa)
- Epigenetics of Endocrine Pancreatic Tumours (IGTP)
- Genome Data Science (IRB Barcelona)
- Hereditary Cancer Group (IGTP)
- High Content Genomics and Bioinformatics (IGTP)
- High Performance Computing Applications for Science and Engineering - Bioinformatics (UAB)
- IN2 Ingeniería de la Información (IN2)
- Information Modeling and Processing (UPC)
- Integrative Biomedical Informatics group of GRIB (UPF, IMIM)
- Integrative Systems Biology, Metabolomics and Cancer (UB)
- Mathematical Modeling of Metabolic Processes (UdL)
- Sequentia Biotech (SeqBio)
- Soft Computing (UPC)
- Statistics and Bioinformatics Research Group (UB)
- Statistics and Bioinformatics Unit (VHIR)
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Metagenomics (8)
- Algorithms, Computational Biology, Complexity and Formal Methods (UPC)
- Clinical statistics and biodiversity (UB)
- Computational Genomics Lab @ UB (UB)
- Genome Data Science (IRB Barcelona)
- Genomics and Bioinformatics Service (UAB)
- High Content Genomics and Bioinformatics (IGTP)
- LifeSciences Research Unit - CRO ()
- Sequentia Biotech (SeqBio)
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Systems Biology and Networks (27)
- Algorithms, Computational Biology, Complexity and Formal Methods (UPC)
- Bioinformatics and Medical Statistics (UVic-UCC)
- Bioinformatics Core Unit (CRAG)
- Bioinformatics Platform (IDIBAPS)
- Biological Chemistry and Biotechnology Group (URL)
- Computational Biology and Complex Systems Group (UPC)
- Computational Biology of RNA processing (CRG)
- Computational Science group of GRIB (UPF, IMIM)
- Control Engineering and Intelligent Systems (UdG)
- Data and Signal Processing Research Group (UVic-UCC)
- Evolution of Insect Metamorphosis (UPF, CSIC)
- Functional Genomics group of GRIB (UPF, IMIM)
- Genome Data Science (IRB Barcelona)
- Integrative Systems Biology, Metabolomics and Cancer (UB)
- Laboratory of Systems Pharmacology and Bioinformatics (UAB)
- Mathematical Modeling of Metabolic Processes (UdL)
- Molecular Modelling and Bioinformatics (UB, IRB Barcelona)
- Nonlinear dynamics, nonlinear optics and lasers (UPC)
- Nutrition, Eumetabolism and Health (UdG)
- Science and Engineering of Emerging Systems (URV)
- Sequentia Biotech (SeqBio)
- Statistics and Bioinformatics Unit (VHIR)
- Structural BioInformatics group of GRIB (UPF, IMIM)
- Structural Informatics & Network Biology (IRB Barcelona)
- The CRG Bioinformatics Unit (CRG)
- Theoretical Chemistry, Modelling and Molecular Engineering (UdG)
- UPC Dinamical Systems (UPC)